open-source healthcare ai

Local-first healthcare AI that never leaves the device

Turn clinical text into structured insight with one line of code.
Entity extraction, PII de-identification, and 1,000+ specialized medical models that run entirely on your own hardware — from a one-liner in Python to a native Swift app on iPhone, powered by Apple MLX. No cloud. No vendor lock-in. No patient data leaving your network.

1,000+ models  ·  12 languages  ·  247 PII checkpoints  ·  100% on-device  ·  Apache-2.0

English · 简体中文 · Español · Français · Deutsch · Italiano · Português · Nederlands · العربية · हिन्दी · తెలుగు · 日本語 · Türkçe · فارسی

_{Real-time PII de-identification — the Nemotron Privacy Filter redacting names, addresses, IDs, and billing data from a clinical discharge packet, entirely on-device. (All values shown are synthetic.)}

from openmed import analyze_text

result = analyze_text(
    "Patient started on imatinib for chronic myeloid leukemia.",
    model_name="disease_detection_superclinical",
)

for entity in result.entities:
    print(f"{entity.label:<12} {entity.text:<28} {entity.confidence:.2f}")
# DISEASE      chronic myeloid leukemia     0.98
# DRUG         imatinib                     0.95

A state-of-the-art clinical NER model running locally — no API key, no network call.

• Specialized models — 1,000+ curated biomedical & clinical models, many outperforming proprietary stacks.
• HIPAA-aware de-identification — all 18 Safe Harbor identifiers, smart entity merging, format-preserving fakes.
• Runs everywhere — CPU, CUDA, Apple Silicon (MLX), and natively in iOS/macOS apps via OpenMedKit.
• One-line deployment — Python API, Dockerized REST service, or batch pipelines.
• Zero lock-in — Apache-2.0, your infrastructure, your data.

OpenMed is built to run where your data already lives. On Apple hardware it accelerates with MLX, and it ships straight into iPhone, iPad, and Mac apps through OpenMedKit — so PII detection and clinical extraction happen fully offline, on the device.

// Add OpenMedKit to your app
dependencies: [
    .package(url: "https://github.com/maziyarpanahi/openmed.git", from: "1.5.5"),
]

• MLX runtime for PII token classification, the Privacy Filter family, and experimental GLiNER-family zero-shot tasks — with a CoreML fallback path.
• One model name, every platform — MLX model names automatically fall back to the matching PyTorch checkpoint on non-Apple hardware.
• Python on Apple Silicon too: pip install "openmed[mlx]".

Guides: MLX backend · OpenMedKit (Swift) · CoreML export

flowchart LR
    A["Clinical text"] --> B["OpenMed<br/>(100% on-device)"]
    B --> C["Medical entities"]
    B --> D["PII detected"]
    B --> E["De-identified text"]
    style B fill:#0D6E6E,stroke:#0A5656,stroke-width:2px,color:#ffffff
    style C fill:#D6EBEB,stroke:#0D6E6E,color:#0E1116
    style D fill:#F7DCD8,stroke:#C5453A,color:#0E1116
    style E fill:#F5E27A,stroke:#A9A088,color:#0E1116

# Core + Hugging Face runtime (Linux, macOS, Windows; CPU or CUDA)
pip install "openmed[hf]"

# Add the REST service
pip install "openmed[hf,service]"

# Apple Silicon acceleration (MLX)
pip install "openmed[mlx]"

from openmed import analyze_text

analyze_text(
  "Patient received 75mg "
  "clopidogrel for NSTEMI.",
  model_name=
  "pharma_detection_superclinical",
)

uvicorn openmed.service.app:app \
  --host 0.0.0.0 --port 8080

from openmed import BatchProcessor

p = BatchProcessor(
  model_name=
  "disease_detection_superclinical",
  group_entities=True,
)
p.process_texts([...])

Offline / air-gapped? Point model_name (or model_id) at a local directory and OpenMed loads it without contacting the Hugging Face Hub:

from openmed import OpenMedConfig, analyze_text

result = analyze_text(
    "Patient presents with chronic myeloid leukemia and Type 2 diabetes.",
    model_id="./models/OpenMed-NER-DiseaseDetect-SuperClinical-434M",
    config=OpenMedConfig(device="cpu"),
)

A curated registry of specialized medical NER models — browse the full catalog.

from openmed import extract_pii, deidentify

text = "Patient: John Doe, DOB: 01/15/1970, SSN: 123-45-6789"

# Extract PII with smart merging (prevents tokenization fragmentation)
result = extract_pii(text, model_name="pii_superclinical_large", use_smart_merging=True)

# De-identify with the method you need
deidentify(text, method="mask")     # [NAME], [DATE]
deidentify(text, method="replace")  # Faker-backed, locale-aware, format-preserving fakes
deidentify(text, method="hash")     # Cryptographic hashing
deidentify(text, method="shift_dates", date_shift_days=180)

• Smart entity merging keeps 01/15/1970 whole instead of fragmenting it.
• Faker-backed obfuscation with custom clinical-ID providers (CPF, CNPJ, BSN, NIR, Codice Fiscale, NIE, Aadhaar, Steuer-ID, NPI).
• HIPAA: all 18 Safe Harbor identifiers, configurable confidence thresholds.
• Batch PII (v1.5.5): extract or de-identify across many documents with BatchProcessor(operation="extract_pii" | "deidentify", batch_size=16).

Complete PII notebook · Smart merging · Anonymization

from openmed import extract_pii

text = "Patient Sarah Connor (DOB: 03/15/1985) at MRN 4471882."

extract_pii(text, model_name="openai/privacy-filter")              # PyTorch baseline
extract_pii(text, model_name="OpenMed/privacy-filter-nemotron")    # same code, different weights
extract_pii(text, model_name="OpenMed/privacy-filter-mlx")         # Apple Silicon (MLX)

Extraction and de-identification across en, fr, de, it, es, nl, hi, te, pt, ar, ja, and tr — 247 PII checkpoints total.

python -c "from openmed import extract_pii; print([(e.label, e.text) for e in extract_pii('Dr. Pedro Almeida, CPF: 123.456.789-09, email: pedro@hospital.pt', lang='pt').entities])"

from openmed import extract_pii

portuguese = extract_pii("Paciente: Pedro Almeida, CPF: 123.456.789-09, telefone: +351 912 345 678", lang="pt", use_smart_merging=True)
dutch      = extract_pii("Patiënt: Eva de Vries, BSN: 123456782, telefoon: +31 6 12345678", lang="nl", use_smart_merging=True)
hindi      = extract_pii("रोगी: अनीता शर्मा, फोन: +91 9876543210, पता: नई दिल्ली 110001", lang="hi", use_smart_merging=True)
arabic     = extract_pii("المريضة ليلى حسن، الهاتف +20 10 1234 5678، الرقم القومي 29801011234567.", lang="ar", use_smart_merging=True)
japanese   = extract_pii("患者 佐藤 花子、電話 +81 90 1234 5678、マイナンバー 1234 5678 9012.", lang="ja", use_smart_merging=True)
turkish    = extract_pii("Hasta Ayşe Yılmaz, telefon +90 532 123 45 67, TCKN 10000000146.", lang="tr", use_smart_merging=True)

for r in (portuguese, dutch, hindi, arabic, japanese, turkish):
    print([(e.label, e.text) for e in r.entities])

A Docker-friendly FastAPI service with request validation, shared pipeline preload, and unified error envelopes.

pip install "openmed[hf,service]"
uvicorn openmed.service.app:app --host 0.0.0.0 --port 8080

# or with Docker
docker build -t openmed:1.5.5 .
docker run --rm -p 8080:8080 -e OPENMED_PROFILE=prod openmed:1.5.5

curl -X POST http://127.0.0.1:8080/pii/extract \
  -H "Content-Type: application/json" \
  -d '{"text":"Paciente: Maria Garcia, DNI: 12345678Z","lang":"es"}'

Model lifecycle (v1.5.5): free memory on demand with GET /models/loaded, POST /models/unload, and a keep_alive idle window:

OPENMED_SERVICE_KEEP_ALIVE=10m uvicorn openmed.service.app:app --host 0.0.0.0 --port 8080
curl -X POST http://127.0.0.1:8080/models/unload -H "Content-Type: application/json" -d '{"all":true}'

See the full REST service guide.

Full guides at openmed.life/docs.

OpenMed's guardian is a fluffy Persian cat styled as a tiny Avicenna (Ibn Sina) — the great Persian physician whose Canon of Medicine was the world's standard medical text for some 600 years. He keeps watch over the open book of medical knowledge, in a palette built around Persian turquoise (fīrūza): a local-first guardian for your most private data.

Contributions welcome — bug reports, feature requests, and PRs alike.

• Open an issue
• Translations welcome — help complete the other-language READMEs linked in the switcher at the top.

OpenMed builds on excellent open-source work — particular thanks to OpenAI (the Privacy Filter architecture), NVIDIA (the Nemotron PII dataset), Hugging Face (transformers & the model ecosystem), Apple (MLX), and the Faker maintainers.

Released under the Apache-2.0 License.

@misc{panahi2025openmedneropensourcedomainadapted,
      title={OpenMed NER: Open-Source, Domain-Adapted State-of-the-Art Transformers for Biomedical NER Across 12 Public Datasets},
      author={Maziyar Panahi},
      year={2025},
      eprint={2508.01630},
      archivePrefix={arXiv},
      primaryClass={cs.CL},
      url={https://arxiv.org/abs/2508.01630},
}

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